ImmunoPheno: a data-driven platform for the design and analysis of immunophenotyping experiments

ImmunoPheno is a data-driven bioinformatics platform designed to enhance the design and analysis of immunophenotyping experiments. This platform aims to overcome the limitations of current cytometry techniques to allow researchers to more accurately and efficiently identify and annotate cell populations in multiplexed antibody-based cytometry data. By leveraging single-cell atlases technologies such as CITE-Seq, ImmunoPheno can improve the phenotypic resolution, accuracy, and reproducibility of cell annotations in experiments.

Contents

Overview and Walkthrough

• What is ImmunoPheno?

TUTORIALS

• Tutorial 1: Predicting the Molecular Type of Neurons
• Tutorial 2: Testing this out. Did we need a title afterall?

API

• Normalizing CITE-Seq Data
  • Installation
  • ImmunoPhenoData
• Querying the Database
  • ImmunoPhenoDB_Connect
• Plots
  • Plotting functions